#!/usr/bin/env bash

mkdir -p ../../data/tmp_classification_branch1/
mkdir -p ../../data/tmp_classification_branch1/data
mkdir -p ../../data/tmp_classification_branch1/models
mkdir -p ../../data/tmp_classification_branch1/results
cd ../../data/tmp_classification_branch1/data
ln -s ../../reduced_candidates/3dcnn_cddv15_v2_kaggle_testset_candidates_v10.pkl 3dcnn_cddv15_v2_kaggle_testset_candidates_v10.pkl
ln -s ../../reduced_candidates/3dcnn_kaggle_testset_candidates_v4_newlabel.pkl 3dcnn_kaggle_testset_candidates_v4_newlabel.pkl
ln -s ../../reduced_candidates/lidc_kaggle_candidates_v15.hdf5 lidc_kaggle_candidates_v15.hdf5
ln -s ../../reduced_candidates/lidc_kaggle_candidates_v9.hdf5 lidc_kaggle_candidates_v9.hdf5
ln -s ../../reduced_candidates/LIDC_true_nodules.pkl LIDC_true_nodules.pkl
ln -s ../../reduced_candidates/LIDC_true_nodules_vol.hdf5 LIDC_true_nodules_vol.hdf5
cd ../../../code/classification_branch1

# for test set
python change_fold_to_kaggle_4_fold.py